0be354a920
Single-commit clean baseline after security scrub of niche-tells, project codenames, internal jargon, and contributor-email leaks. Contents: - 100 Rust crates (_primitives/_rust/) - 37 agent manifests (_manifests/) + generated specs (_generated/) - 67 user-invocable skills (skills/) - 33 hooks (hooks/) - Composition blocks (_blocks/) - Documentation (docs/, README.md) - TS adapter packages (_ts_packages/) - Assembler (_assembler/) - Roles (_roles/) - Templates (_templates/) - Forgejo CI (.forgejo/) Author: Denis Parfionovich <info@greendragon.info> License: see LICENSE.
17 lines
1.2 KiB
Bash
Executable file
17 lines
1.2 KiB
Bash
Executable file
#!/usr/bin/env bash
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# ALIGNMENT CHECK HOOK
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# Fires on UserPromptSubmit when comparison/experiment keywords detected.
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# THREE-TIME REPEAT BUG: exp6, exp24-28, basecaller — all forgot alignment.
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INPUT=$(cat)
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PROMPT=$(printf '%s' "$INPUT" | jq -r '.user_prompt // empty' 2>/dev/null)
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[ -z "$PROMPT" ] && exit 0
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# Detect comparison/experiment keywords
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if echo "$PROMPT" | grep -qiE 'compar|delta|divergen|versus|vs\b|difference|запуск|experiment|exp[0-9]|прогон|basecall|сравн|два генома|two genome'; then
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cat <<'HOOK'
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{"hookSpecificOutput":{"hookEventName":"UserPromptSubmit","additionalContext":"<alignment-check>\n⚠️ ALIGNMENT CHECK (E14/E20 — failed 3 times!)\n\nBefore ANY comparison between two data streams:\n1. Are they ALIGNED? (MAFFT for genomes, PAF for signal, CIGAR for reads)\n2. How do you KNOW? Show the alignment file/proof.\n3. Does position[i] in stream A = position[i] in stream B?\n\nHistory: exp6 (25%→141x after MAFFT), exp24-28 (25%→60% after PAF alignment).\nCost of forgetting: 8 wasted experiments, ~5 hours.\n\nIf comparing genomes → MAFFT align first.\nIf comparing signal→base → use PAF/segmentation first.\nIf unsure → STOP and ask.\n</alignment-check>"}}
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HOOK
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fi
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exit 0
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