fix(substrate): dangling handoffs + atomar manifest fill-out + validator extension
Group F — manifest, capability, role, and assembler cleanup (post-audit 2026-05-02).
Dangling handoff targets stripped:
- validator.toml: removed handoffs to physics-deriver, patent-compliance
- code-implementer.toml: removed physics-deriver handoff
- architect.toml: removed physics-deriver
- ml-implementer.toml: removed physics-deriver, fixed "multi-node multi-node" typo
- ml-researcher.toml: removed physics-deriver, patent-researcher
- researcher.toml: removed patent-researcher
None of those manifest files exist in _manifests/. Comments added explaining
the removal date for future re-authoring.
Validator extension (_assembler):
- src/validator.rs: extended validate() with check_handoff_targets — every
[[handoff]].target must point to existing _manifests/<name>.toml.
Future dangling handoffs blocked at validate time.
- src/validator_tests.rs (new, 133 LOC): unit tests for handoff-target check.
- tests/fixtures/_manifests/: added valid stubs for previously-missing manifests
(architect, critic, security-auditor, validator,
ml-implementer, ml-researcher, infra-implementer)
so existing fixtures pass the new validator gate.
- tests/snapshots/: insta snapshots updated for researcher + code-implementer.
Atomar manifest fill-out (replaced stock copy-paste with domain-specific):
- code-implementer-typescript: Drizzle/Zod/Next.js semantics
- code-implementer-go: mesh networking, embedded servers
- code-implementer-swift: SwiftUI, SPM, macOS menubar
- code-implementer-python: RULE 0.2 exception language
- code-implementer-flutter: Riverpod, Clean Architecture
- infra-implementer-cicd/iac/container/secrets: tool-specific bans + scopes
- researcher-web/code: output_extra_fields fixed (was code-implementer copy-paste
"Largest file LOC", "Tests pass count" — now sources cited /
evidence grade / gaps section)
Capability schema completeness:
- policy/no-git-ops + quality/cargo-check-green: added stage = "runtime"
- 8 capabilities: added explicit parents = [] (was missing/inconsistent)
Role schema:
- _roles/auditor.toml + merger.toml: added [taxonomy] + [lineage] (was missing)
- _roles/explorer.toml: added comment that "Explore" is the canonical Claude Code
subagent type (case-sensitive)
Reference path cleanup (manifest references):
- critic.toml: ~/.claude/skills/architecture-rules/... -> path:user-skills/...
- researcher.toml: stripped ~/.claude/agents/validator.md (machine-local)
Misc:
- frontend-validator.toml: renumbered duplicate step 6 -> step 7
kei-registry test fixture suppression:
- tests/fixtures/{atom-sample,fake-kit,mini-kit}/.kei-registry-ignore (3 new files)
- DNA-INDEX.md was inflating atom count by ~10% from test fixture rows; ignore-file
hooks ready, kei-registry walker implementation is a follow-up.
Tests: 59 passed; 0 failed; 1 ignored (pre-existing #[ignore]). cargo check clean.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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