12-agent audit (2 waves Opus+Sonnet, 6 slices each) flagged 3 HIGH-tier
issues that BOTH waves agreed on, plus 5 doc-honesty findings. This
batch fixes the lot.
== CI green (was failing on main 1207cf5) ==
- _primitives/_rust/Cargo.toml — workspace tokio gains `io-std` feature
(needed by kei-mcp/src/main.rs which calls tokio::io::{stdin,stdout})
- _primitives/_rust/kei-mcp/Cargo.toml — dev-deps tokio gains `test-util`
feature (needed by tests/tools_call_timeout.rs for tokio::time::advance
and Builder::start_paused). Both verified locally:
`cargo check -p kei-mcp` ✓
`cargo test --no-run -p kei-mcp` ✓ (3 test binaries link)
[REAL: ran 2026-05-03 in this session]
== HIGH-tier audit fixes (consensus across waves) ==
1. SQLi escape in agent-outcome-backfill.sh:110
- 4 of 12 agents flagged: TOOL_USE_ID was JSON-derived and
interpolated raw into SQL. Allowlist on $SHIPPED protected today
but a future case-statement removal opened the surface.
- Fix: tiny `_sql_esc` helper that doubles single-quotes (SQL-99
standard escape), applied to SHIPPED + TOOL_USE_ID. STUBS already
integer-validated.
2. PRAGMA user_version=9 in install/sql/outcome-only-schema.sql
- W1 outcome-only critic flagged: the SQL fallback installed a
v9-equivalent flat schema but left user_version=0. A LATER
`kei-ledger init` (e.g. when user upgrades to full kit) would
re-run migrations v1-v9 and ALTER TABLE ADD COLUMN duplicate-error
mid-migration → broken DB.
- Fix: set PRAGMA user_version=9 before COMMIT so the binary's
migration runner sees current ≥ target and short-circuits.
3. backup_file mv→cp + uninstall macOS-portable awk
- W1+W2 outcome-only flagged: lib-backup.sh uses `mv` which DELETES
the target before _jq_merge_hooks runs; `|| true` swallowed the
subsequent jq read-error → silent settings.json loss.
- Fix in lib-profile-outcome-only.sh: `cp -p` aside, drop `|| true`,
return 1 on merge failure (trap restores).
- PROFILE-OUTCOME-ONLY.md uninstall used GNU sed `,+1` extension
which BSD sed (macOS) does not support — uninstall silently
no-op'd on macOS, leaving orphan CLAUDE.md text.
- Fix: replace with portable `awk` recipe; also added `rm -f` for
the agent-toolstats.jsonl sidecar (privacy completeness).
== Doc honesty pass (RULE 0.18 numerics + RULE 0.4 citations) ==
4. README.md count drift — verified all values against filesystem:
* 102→105 Rust crates (Cargo.toml workspace `members` count)
* 67→68 skills (`ls skills/ | wc -l`)
* 35→38 hooks (`grep -c '"command":' settings-snippet.json`)
* 37→38 agent manifests (`ls _manifests/*.toml | wc -l`)
* 82→85 substrate blocks (`find _blocks/ -name '*.md' | wc -l`)
* 18 capability atoms VERIFIED via `find _capabilities/ -name '*.md'`
(encyclopedia §3 row count of 17 is in a separate file and is a
known internal display issue, not changed in this commit)
* 495→565 active DNAs (per docs/DNA-INDEX.md header 2026-05-03)
Each value now carries a `[REAL: <command>]` style trailer per
RULE 0.18.
5. README.md DNA "80-char identity" → "≥33-char variable-length"
- W1+W2 reviewer-pass flagged FALSE: docs/DNA-FORMAT.md SSoT says
minimum 33 chars; 80 was nowhere in code or spec
- Fix in README.md:36 + docs/PHILOSOPHY.md:39 + docs/DNA-INDEX.md:1352
6. README.md "Eleven install profiles (... Cursor / Continue / Zed /
Aider / Docker / Nix)" — Cursor/Continue/Zed/Aider/Docker/Nix were
never install profiles, they were bridge targets
- Fix: list 12 actual profiles from _primitives/MANIFEST.toml,
mention bridges as separate concept
7. .claude-plugin/plugin.json license MIT → Apache-2.0
- W2-Sonnet reviewer flagged: LICENSE file is Apache-2.0 (since
2026-04-30 per NOTICE), but plugin.json still declared MIT —
plugin marketplace would show wrong license
8. docs/ARCHITECTURE.md:318 placeholder URL `https://example.invalid/...`
- W2-Sonnet reviewer flagged: dead link in published docs
- Fix: remove the bad href, describe ssl-rule-file as per-user
install outside the public repo
9. skills/sleep-on-it/SKILL.md Wagner et al. 2004 citation
- W1+W2 reviewer flagged RULE 0.4 violation: citation without
verification marker
- Fix: added [VERIFIED: doi:10.1038/nature02223] + clarification
that the original paper showed slow-wave-sleep (not strictly REM)
insight gain — our metaphor is a loose mapping
10. encyclopedia/substrate-overview.md §5 fabricated TS deps
- W1-Opus doc-consistency flagged RULE 0.4.b violation: 5 of 6
package rows had INVENTED dependency strings
(`recall-ai-sdk ^1.0.0`, `nodemailer-mock ^2.0.0`,
`telegram-typings ^4.10.0`, etc — none exist in the actual
package.json files)
- Fix: regenerated table from real `package.json` reads via
`node -p "require(...).dependencies"` for each of the 6 packages
- Fix: also corrected version drift (5 packages all 0.14.0 now)
Verification:
- Outcome-only end-to-end install against fake $HOME succeeds:
hooks installed, ledger schema at user_version=9, settings.json
created cleanly, all 5 documented files present
[REAL: ran 2026-05-03 in this session]
- `cargo check -p kei-mcp` + `cargo test --no-run -p kei-mcp` clean
Audit findings NOT yet addressed (deferred to next batch):
- README:65 git clone github URL — repo is private; reviewer flagged
external strangers cannot clone; will resolve via Quick Start rewrite
- npm.pkg.github.com / @keisei84 leftover sweep — both waves verified
ZERO refs, no fix needed
- safeEqual timing leak in TS server (W2 sec MEDIUM)
- HTTP server bind 0.0.0.0 (W2 sec MEDIUM)
- Unbounded request body (W2 ci MEDIUM)
- --dry-run silent ignored on non-outcome profiles (W1+W2 MEDIUM)
- Doc-link missing for MEMORY/DNA/LEDGER format specs from README
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Two related changes:
1. Author email update across the kit
- All `info@greendragon.info` references replaced with `parfionovich@keilab.io`
- Touched: NOTICE, README.md, _ts_packages/package.json (and 5 adapter packages),
plus 90+ Cargo.toml files
- Apache-2.0 attribution unchanged (Denis Parfionovich, 2026)
2. Cargo workspace.package SSoT for author/license/repository/homepage
- Added to [workspace.package]:
authors = ["Denis Parfionovich <parfionovich@keilab.io>"]
license = "Apache-2.0"
repository = "https://github.com/KeiSei84/KeiSeiKit-1.0"
homepage = "https://github.com/KeiSei84/KeiSeiKit-1.0"
- All ~89 member crates migrated from inline declarations to:
authors.workspace = true
license.workspace = true
(repository/homepage where applicable)
- Closes audit gap: kei-graph-stream, kei-cortex, kei-shared previously had no
license field at the crate level, blocking `cargo publish` on those.
Now they inherit Apache-2.0 from workspace.
- kei-scheduler/Cargo.toml: removed stray duplicate `authors` line introduced
by an earlier migration sweep.
cargo check --workspace: clean. No code changes; metadata-only migration.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Group E — Cargo workspace hygiene (post-audit 2026-05-02).
Workspace dependency inheritance:
- 40+ member crates migrated from inline dep pinning to { workspace = true }.
Was: every crate redeclared clap/serde/rusqlite/tokio/etc inline, defeating
the [workspace.dependencies] SSoT and forcing N edits per upgrade.
Authoritative pins now live solely in _primitives/_rust/Cargo.toml.
Major version splits resolved:
- dashmap: 5 vs 6 (kei-cortex/kei-gateway) -> 6 in workspace
- tower: 0.4 vs 0.5 (kei-cortex/kei-forge) -> 0.5 in workspace
- notify: 6 vs 8 (kei-projects-watcher/kei-watch+kei-skills) -> 8 in workspace
- thiserror: 1 vs 2 (workspace/keisei) -> kept 1; keisei downgraded
Closed: dual-major compilation = wasted build time + ABI mismatch risk
at trait boundaries.
Profile / orphan cleanup:
- kei-changelog/Cargo.toml: deleted [profile.release] block (workspace member
profiles are silently ignored by Cargo since 1.0).
- kei-brain-view/Cargo.toml: removed dangling "[workspace] table stripped on
merge" comment (orphan from prior decomposition).
rust-version SSoT:
- 27+ member crates migrated from inline rust-version = "1.75" to
rust-version.workspace = true. Workspace declares 1.77; the inline 1.75 pins
were stale and misleading (with resolver 2 the workspace MSRV won anyway).
cargo check --workspace: clean (only pre-existing sqlx-postgres future-incompat
warning + frustration-matrix dead-code warning, neither introduced by this change).
Note: _assembler/ lives outside _primitives/_rust workspace, so its Cargo.toml
was not touched here. Remaining edition-2024 question for _assembler is a
separate decision.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
User pushback: "транслирует в онлайне какие агенты создаются? основное
окно агента, а дальше при запусках появляются новые ветки, мы показываем
в онлайне как агенты собираются и работают"
Earlier `kei-graph-export` rendered the static SUBSTRATE (all 581 atoms,
catalog-style). User wanted the LIFECYCLE: orchestrator at center, every
new agent as a fading-in branch, every tool call as a pulse, every
completion as a fade-out. TTL = until done; pure online, no history
accumulation per user direction.
Three-layer architecture, all conforming to schema /tmp/agent-events-schema.md:
LAYER 1 — Event emitters (4 hooks)
hooks/agent-event-spawn.sh PreToolUse:Agent → agent_spawn event
hooks/agent-event-done.sh PostToolUse:Agent → agent_done event
(parses STATUS-TRUTH MARKER for outcome,
computes cost_usd from token×pricing table)
hooks/tool-use-event.sh PreToolUse:Bash|Read|Edit|Write|Grep|Glob|NotebookEdit
→ tool_use event
hooks/skill-record.sh EXTENDED — second emit step writes skill_use
event in addition to existing kei-ledger
record-skill call
All 4 are POSIX /bin/sh, defensive (never block, exit 0), bypass via
KEI_EVENTS_BYPASS=1. Append-only JSONL to
~/.claude/memory/agent-events.jsonl.
Smoke: 4 synthetic invocations cover spawn/done/tool/filter cases.
LAYER 2 — kei-graph-stream Rust daemon
_primitives/_rust/kei-graph-stream/ (~480 LOC, 5 files + 1 test)
- Tails events.jsonl every 200ms (poll-based, no notify dep).
- Parses each event, updates AliveState (insert on spawn, remove on done).
- Broadcasts {"type":"event","data":<event>} to all WebSocket clients.
- On client connect: sends {"type":"snapshot","alive":[...]} first.
- Heartbeat: {"type":"ping"} every 30s.
- axum 0.7 + ws feature (already in Cargo.lock via kei-cortex).
- Bypass: KEI_GRAPH_STREAM_BYPASS=1.
Bound to 127.0.0.1:8201 (loopback only). Endpoints:
GET /stream → WebSocket upgrade
GET /health → "kei-graph-stream alive"
4 unit + 1 integration test. cargo build clean.
Installed binary: ~/.cargo/bin/kei-graph-stream
Launchd plist: io.keisei.graph-stream (RunAtLoad, KeepAlive)
Loaded as PID 52678, /health 200 OK verified.
LAYER 3 — live-graph.html (single-file frontend)
~/Projects/lbm-graph-viz/live-graph.html (~464 LOC, self-contained)
- SVG full-viewport, dark #0f172a, CSS grid background.
- Pinned center node "main" (orchestrator), gold #fbbf24, glowing.
- Agents radiate via D3 force-simulation; color-by-model
(sonnet=green, opus=red, haiku=blue, default=gray).
- On agent_spawn: fade-in 300ms, edge from main to new node.
- On tool_use: pulse on agent node (r 8→12→8 over 400ms) +
floating tool name label fades 800ms.
- On agent_done: outcome-color flash → fade-out 800ms → remove.
- WebSocket client: ws://127.0.0.1:8201/stream, exponential-backoff
reconnect (1s→30s).
- Top-right status badge: ● connected | ○ reconnecting | ✕ disconnected.
- Bottom counters: alive / spawned / tool calls / done / last event age.
- No build step. D3 v7 from CDN. Pure HTML+JS+CSS.
End-to-end smoke (this machine, just now):
- daemon health 200 OK
- hook injected agent_spawn → daemon broadcasts → AliveState=1
- hook injected agent_done → daemon broadcasts → AliveState=0
- frontend file syntax-checked clean
What this does NOT do (deferred, by user direction "это онлайн"):
- History persistence — agents who finished are GONE from the graph.
Per-session log remains in events.jsonl + sleep-sync if user wants
to consult later, but the live view is RIGHT NOW only.
- Sub-agent attribution beyond "main" — orchestrator-direct tool calls
show on the orchestrator node. Sub-agent's internal tool calls would
need session-id correlation; current schema has agent_id="main"
placeholder for non-Agent tool calls.
- Replay mode — no time-scrubber. Possible follow-up if useful.
- Auth on WebSocket — bound to 127.0.0.1 only. Local-only by design.
=== STATUS-TRUTH MARKER ===
shipped: functional
stubs: 0
cargo-check: PASS
behaviour-verified: yes
follow-up-required:
- Sub-agent tool-call attribution (correlate session_id chain)
- Replay mode with time scrubber (if user finds use)
- Tool aggregator nodes ("Bash bucket" with N) instead of per-agent pulses
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
User pushback: "можно нашего Кейси подключить к обсидиан? будет в
онлайне строить граф из всех наших агентов?"
Closer-to-question architecture: don't build new Obsidian plugin —
re-use the legacy `~/Projects/lbm-graph-viz/` D3 viewer (lineage:
keicode → living-graph → lbm → lbm-graph-viz → keisei-graph). Strip
its Hebbian/co-change edges, replace with DNA-derived edges from the
kei-registry + kei-ledger. Open in any browser, file://...index.html.
NEW Rust crate `_primitives/_rust/kei-graph-export/` (~440 LOC, 5 files)
Reads:
~/.claude/registry.sqlite (730 active blocks)
~/.claude/agents/ledger.sqlite (6 agents post-cleanup)
_manifests/*.toml (38 agent manifests)
Emits 581-node, 291-edge graph. Edge types:
block_dep 171 manifest → atom (blocks=[])
path_ref 99 manifest → atom (path:NAME refs)
branch_lineage 11 parent_branch → branch
agent_uses_manifest 10 agent → manifest (slug from branch name)
Output formats:
--format spaces-fragment → `window.RUNTIME_SPACE = {...}` JS file
--format json → raw {nodes, links} for downstream tools
Block-name lookup is multi-resolution: each block is registered under
display name + lowercased + file-stem slug (from path basename) so
manifest references like `blocks = ["baseline"]` resolve to a registry
row whose `name` column holds "BASELINE — inherit from Main Claude".
Without this fix the graph had 0 block_dep edges; with it, 171.
NEW background updater `hooks/graph-export-watcher.sh` + launchd plist
template `_primitives/templates/io.keisei.graph-export.plist`
5-second loop:
while true; do
kei-graph-export --format spaces-fragment --output <viz>/data-runtime.js.tmp
mv <viz>/data-runtime.js.tmp <viz>/data-runtime.js # atomic
sleep 5
done
launchd plist substitutes `HOME_DIR` and `HOOKS_DIR` placeholders at
install time. RunAtLoad=true, KeepAlive=true. Logs to
~/.claude/memory/graph-export.log. Bypass: GRAPH_EXPORT_BYPASS=1.
Loaded into user-side launchd (PID 16474 confirmed running). File
mtime advances every 5s — live updates verified.
PATCH `~/Projects/lbm-graph-viz/index.html` (outside kit, surgical)
Three changes:
1. Add `<script src="data-runtime.js">` BEFORE `spaces.js` (window
global available when SPACES is defined).
2. After spaces.js: `if (window.RUNTIME_SPACE) SPACES.runtime = window.RUNTIME_SPACE;`
3. Auto-refresh setInterval(5s): fetch data-runtime.js, eval (re-
assigns window.RUNTIME_SPACE), hash-compare, re-render via
`rebuildGraph()` if currently viewing the runtime space.
window.RUNTIME_SPACE (not const RUNTIME_SPACE) avoids the
"const cannot be re-declared" error on subsequent eval() calls.
Effect: open file://~/Projects/lbm-graph-viz/index.html in any
browser, switch to "Runtime" space — full DNA graph of every agent /
atom / skill / branch / manifest / hook / primitive / rule, force-
laid-out by D3. Updates every 5 seconds without page reload.
What this does NOT do (deferred):
- Obsidian mirror — separate work, would emit .md per node into
~/Projects/KeiSeiVault/. Useful for backlinks navigation but
file-watcher latency similar to current 5s polling.
- Skill-invocation edges — table is empty until next Skill tool
use; will populate naturally.
- Scoped queries (orphan finder, hot-path PageRank). Out of scope
for v1; the JSON --format export feeds any downstream tool.
- `agent_uses_manifest` heuristic warns on unknown subagent slugs
(e.g. `physics-deriver` with no manifest yet). Non-fatal.
=== STATUS-TRUTH MARKER ===
shipped: functional
stubs: 0
cargo-check: PASS
behaviour-verified: yes
follow-up-required:
- Obsidian vault mirror (Phase C, separate work)
- Skill-edges populate from real Skill use (not blockered)
- Hot-path PageRank highlighting in viewer (cosmetic)
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Parfii-bot