Closes engine bugs #1, #2, #3 from the user's backlog.md entry dated
2026-05-11 "kei-refactor-engine — 4 false-positive bugs". Bug #4 was
fixed in 6cd99982 (wikilink path-norm + handoff scanner removal).
## Bug #1 — vendored marketplaces skip
Engine was scanning `plugins/marketplaces/claude-plugins-official/` —
vendored upstream code where Constructor Pattern thresholds don't
apply. ~246 cp-violations were from this tree.
Fix: `tree::should_skip_path()` central filter. Skips any path
component named `marketplaces`, `target`, `node_modules`, or `.git`.
Applied via `WalkDir::filter_entry()` in `collect_markdown`,
`collect_with_ext`, `scanners::cp::scan`, `scanners::orphans::scan`,
`scanners::orphans::all_basenames`. `scanners::cp::skip_dir` now
delegates to `should_skip_path` (removed the older inline
`/target/`-substring check).
## Bug #2 — hooks-share-matcher false-positive class
Claude Code hook chains are designed to support N hooks per event by
design. `scanners::hooks` was flagging every pair sharing a matcher
as a "redundancy conflict" — 9 hooks/medium findings in the last
deep-sleep run, every one false-positive.
Fix: `scanners::hooks::scan` reduced to a no-op stub returning
`Vec::new()`. Module docstring documents the retraction + future
direction (a real `hooks-validity` scanner for broken shebangs,
missing chmod, syntax errors would replace it).
## Bug #3 — `.patch` file not unified diff
Already resolved in prior commit (v0.14.1 retraction in patch.rs):
CLI default is `plan-autoresolve.md`, Phase C template references
`-autoresolve.md` suffix, `write_patch` is deprecated shim. Only
legacy `.patch` artefacts in sync-repo/reports/ remain — those are
audit trail, not active.
## Phase C draft file emission (deep-sleep-trigger-prompt.md §6.d)
The earlier Phase C template emitted `proposed_rule` markdown blocks
only — no actionable artefacts. Extended §6 with step 6.d: when
WITH_FORK=1 AND fork branch was created, ALSO write skeleton draft
files into the branch:
sync-repo/sleep-deep/YYYY-MM-DD/drafts/rules/<slug>.md
sync-repo/sleep-deep/YYYY-MM-DD/drafts/hooks/<slug>.sh
Drafts follow pattern-codifier-agent Phase 3 templates. Phase C does
NOT register hooks — that's pattern-codifier's job via /sleep-review
morning click-flow (skill Phase 3a added in ~/.claude commit 49a320d).
This closes the loop: Phase C surfaces draft → morning review clicks
approve → pattern-codifier installs → settings.json registered.
Smoke-test required in §6.d: every emitted `.sh` MUST `bash -n` clean
or be excluded from commit + listed in plan markdown.
## Results on ~/.claude/memory/sync-repo (live data)
| Scanner | Before | After | Delta |
|-----------|-------:|------:|------:|
| orphans | 108 | 1 | -107 |
| hooks | 2 | 0 | -2 |
| cp | 174 | 0 | -174 |
| **TOTAL** | 284 | 1 | -283 |
On full ~/.claude scan: total drops from ~1614 (per 2026-05-11
backlog) to 983 (cp=186 + orphans=797 — orphan count high because
~/.claude tree has many memory/chatlogs/ refs out-of-tree).
## Tests
12/12 pass on kei-conflict-scan workspace (4 unit + 8 integration).
Pre-existing `oversize_file_flagged` + `orphan_wikilinks_flagged`
still green; new `cross_repo_wikilink_not_flagged` +
`path_prefixed_wikilink_matches_basename` from 6cd99982 still green.
Private mirror at ~/Projects/KeiSeiKit/_primitives/_rust/ synced
(4 files: tree.rs, scanners/cp.rs, scanners/orphans.rs,
scanners/hooks.rs).
Closes backlog "engine-noise-2026-05-11" tag bugs #1, #2, #3.
Two architectural bugs in orphans scanner — both surfaced by morning
/sleep-review of deep-sleep/2026-05-12-0400 (108 false-positive
orphan-wikilinks; the engine was scanning sync-repo MEMORY.md and
flagging every `[[../../../rules/X]]` cross-repo ref as broken).
1. Asymmetric normalization in extract_wikilinks
- `all_basenames(root)` indexed file_stem (lowercase, no path)
- `extract_wikilinks` returned lowercased FULL link text including
`../../../`-prefix and `subdir/` segments
- Result: `[[chatlogs/X/Y]]` never matched `Y.md` in index, every
`[[../../../rules/X]]` always flagged orphan
Fix: `normalize_target(raw) -> Option<String>` strips path prefix,
strips `.md` suffix, returns None for `../`-rooted refs that escape
the scan tree (engine cannot validate cross-repo targets).
2. extract_handoffs scanner removed
- Regex `^\s*-\s*\*\*([a-z0-9][a-z0-9_-]{2,})\*\*` was matching every
prose bold-bullet, e.g. `- **english-jargon** — last 7d:` in
backlog.md or `- **L1-Path-C**:` in chatlogs.
- sync-repo scan: 0 real handoff sections present, 100% of matches
were prose. Real handoff syntax in agent-graph repos uses YAML
frontmatter, not prose markdown bullets.
- Scanner deleted along with its helper; wikilink scanner alone
covers the explicit `[[...]]` ref use case.
## Result on sync-repo (live data)
| Metric | Before | After |
|----------------|-------:|------:|
| orphan refs | 108 | 1 |
| false-positive | 107 | 0 |
Remaining 1 = legitimate `[[wikilink]]` literal in backlog.md prose.
## Tests added (already present in HEAD via prior fleet commit)
- `tests::cross_repo_ref_skipped` — `../../../foo` -> None
- `tests::path_prefixed_target_basenamed` — `chatlogs/X/Y` -> "Y"
- `tests::plain_basename_passes_through`
- `tests::md_suffix_stripped`
- integration `cross_repo_wikilink_not_flagged` (E2E)
- integration `path_prefixed_wikilink_matches_basename` (E2E)
12/12 tests pass. Release binary rebuilt + installed to ~/.cargo/bin/.
Private mirror at ~/Projects/KeiSeiKit/_primitives/... synced.
Closes backlog.md "engine bug #4" (added by user via prior /sleep-review).
Two related changes:
1. Author email update across the kit
- All `info@greendragon.info` references replaced with `parfionovich@keilab.io`
- Touched: NOTICE, README.md, _ts_packages/package.json (and 5 adapter packages),
plus 90+ Cargo.toml files
- Apache-2.0 attribution unchanged (Denis Parfionovich, 2026)
2. Cargo workspace.package SSoT for author/license/repository/homepage
- Added to [workspace.package]:
authors = ["Denis Parfionovich <parfionovich@keilab.io>"]
license = "Apache-2.0"
repository = "https://github.com/KeiSei84/KeiSeiKit-1.0"
homepage = "https://github.com/KeiSei84/KeiSeiKit-1.0"
- All ~89 member crates migrated from inline declarations to:
authors.workspace = true
license.workspace = true
(repository/homepage where applicable)
- Closes audit gap: kei-graph-stream, kei-cortex, kei-shared previously had no
license field at the crate level, blocking `cargo publish` on those.
Now they inherit Apache-2.0 from workspace.
- kei-scheduler/Cargo.toml: removed stray duplicate `authors` line introduced
by an earlier migration sweep.
cargo check --workspace: clean. No code changes; metadata-only migration.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Group E — Cargo workspace hygiene (post-audit 2026-05-02).
Workspace dependency inheritance:
- 40+ member crates migrated from inline dep pinning to { workspace = true }.
Was: every crate redeclared clap/serde/rusqlite/tokio/etc inline, defeating
the [workspace.dependencies] SSoT and forcing N edits per upgrade.
Authoritative pins now live solely in _primitives/_rust/Cargo.toml.
Major version splits resolved:
- dashmap: 5 vs 6 (kei-cortex/kei-gateway) -> 6 in workspace
- tower: 0.4 vs 0.5 (kei-cortex/kei-forge) -> 0.5 in workspace
- notify: 6 vs 8 (kei-projects-watcher/kei-watch+kei-skills) -> 8 in workspace
- thiserror: 1 vs 2 (workspace/keisei) -> kept 1; keisei downgraded
Closed: dual-major compilation = wasted build time + ABI mismatch risk
at trait boundaries.
Profile / orphan cleanup:
- kei-changelog/Cargo.toml: deleted [profile.release] block (workspace member
profiles are silently ignored by Cargo since 1.0).
- kei-brain-view/Cargo.toml: removed dangling "[workspace] table stripped on
merge" comment (orphan from prior decomposition).
rust-version SSoT:
- 27+ member crates migrated from inline rust-version = "1.75" to
rust-version.workspace = true. Workspace declares 1.77; the inline 1.75 pins
were stale and misleading (with resolver 2 the workspace MSRV won anyway).
cargo check --workspace: clean (only pre-existing sqlx-postgres future-incompat
warning + frustration-matrix dead-code warning, neither introduced by this change).
Note: _assembler/ lives outside _primitives/_rust workspace, so its Cargo.toml
was not touched here. Remaining edition-2024 question for _assembler is a
separate decision.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Parfii-bot